PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020360-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 143aa    MW: 16417 Da    PI: 8.9842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020360-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.5e-12491131279
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                            k++ l+lpk+ +e + +k   +  +++ de+gr+W+v+++ +k+s r+  ++GWk+ ++an ++ gDf
  SMil_00020360-RA_Salv  49 KKNVLYLPKRVIEYYHLK--IPNVISFVDEQGREWDVTVSKDKGSYRC-SAGGWKRVCEANLIDIGDF 113
                            6788********888888..6779***************555555554.357***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-1235113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-1237113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.93938142IPR003340B3 DNA binding domain
SMARTSM010190.003642130IPR003340B3 DNA binding domain
PfamPF023628.3E-1049113IPR003340B3 DNA binding domain
CDDcd100171.63E-953113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDTPPHPHRR RVPSTRRNKK LEDDAEISEP GLAVPPEIPC FAWRAKPAKK NVLYLPKRVI  60
EYYHLKIPNV ISFVDEQGRE WDVTVSKDKG SYRCSAGGWK RVCEANLIDI GDFEAKLHIV  120
VMVTSSCRDR PSDRKILILC GEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-09B3 family protein