PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020465-RA_Salv
Common NameSPL2
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 456aa    MW: 49707.5 Da    PI: 8.27
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020465-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.41.1e-39190266278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC++dls akeyhr+h+vC+ hsk+p+v+v g+e+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+
  SMil_00020465-RA_Salv 190 CQVEGCNVDLSLAKEYHRKHRVCDSHSKCPKVVVGGRERRFCQQCSRFHSLLEFDEKKRSCRRRLSDHNARRRKPQQ 266
                            **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.7E-32184251IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.872187264IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37188269IPR004333Transcription factor, SBP-box
PfamPF031106.0E-30190263IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
LSCLMSHFME MEWNAKWDWE NLAAFGSKAI ESPKNLQLAD WSIVDDEEIH GGSFNLSAAC  60
GGNSGASGSD GRHGSSAKSS ISASTDSSCK DRMQTSILTF TTSEGSSGNF SKKIEMKGIE  120
LSGTSSTPDA SVGSAEALLG LKLGKRTYFE NTGGGGTVKS TSFSAMPAPA TTTTAPKKTK  180
SSAPNAPIFC QVEGCNVDLS LAKEYHRKHR VCDSHSKCPK VVVGGRERRF CQQCSRFHSL  240
LEFDEKKRSC RRRLSDHNAR RRKPQQETIQ FNLPRLSTPF YGGTHQMSFM LNNPPPDHSR  300
TTANSIWNNS KFALAKGCSL KSEGDEGIEE PLHIPGIRVP QAINMQNAAN GLSASKHSSR  360
SCKGSLISSL DAAPEYRRAL SLLSSNSWDS CNQESIQLHH QLHENTPNTI QPMYHAIPEG  420
VPFSSSDLWP TGPHHHVGMG SFKTPYDADF YSNILN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-26181263284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245262KKRSCRRRLSDHNARRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378780.0KF437878.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 2 (SPL2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071232.10.0squamosa promoter-binding-like protein 3
RefseqXP_020547500.10.0squamosa promoter-binding-like protein 3
RefseqXP_020547501.10.0squamosa promoter-binding-like protein 3
TrEMBLA0A075FEU70.0A0A075FEU7_SALMI; SQUAMOSA promoter binding protein-like 2 (Fragment)
STRINGMigut.K00951.1.p1e-153(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-55squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza.
    J Integr Plant Biol, 2014. 56(1): p. 38-50
    [PMID:24112769]