PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020476-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 239aa    MW: 25887.6 Da    PI: 7.8982
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020476-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.42.6e-10101120120
                   GATA   1 CsnCgttkTplWRrgpdgnk 20 
                            C+nC tt+TplWR+gp+g+k
  SMil_00020476-RA_Salv 101 CANCDTTSTPLWRNGPRGPK 120
                            ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.001795135IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.35695118IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-598119No hitNo description
Gene3DG3DSA:3.30.50.105.5E-899120IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-7101120IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLFSMANGHR GFDEGELYSF ASSSPSASVD CTLSLGTPST RVTNESSHHH HEKKRSSCMS  60
NFGWNILPSK HTPPPSSAKP HRGSTNTNSS SGGDPLLARR CANCDTTSTP LWRNGPRGPK  120
VIFHFLPLAY MYAFAMQCLR YSLQEGREKG DGGGATSNGG GANGAHVEAQ YMMNGSWTPS  180
AQKAPCYSSG YGSEYRFMED DAAVDHRDSE MSGGGGGVPF MSWRFNVTDR PSLVHDFTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097106.12e-95GATA transcription factor 18-like
TrEMBLA0A2G9HG204e-97A0A2G9HG20_9LAMI; Uncharacterized protein
STRINGcassava4.1_033370m2e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-35GATA family protein