PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020647-RA_Salv
Common NameMYB85
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 258aa    MW: 28798.9 Da    PI: 5.281
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020647-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151463147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                           +g+WT+eEd +l ++++ +G g+W+  ++       gRt++++k++w+++
  SMil_00020647-RA_Salv 14 KGPWTPEEDAKLTQYIHAHGAGNWRNLPKNAAerlPGRTDNEIKNYWNTH 63
                           79********************99999988888888************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23572IPR009057Homeodomain-like
SuperFamilySSF466892.8E-16874IPR009057Homeodomain-like
PROSITE profilePS5129421.771968IPR017930Myb domain
SMARTSM007172.7E-141366IPR001005SANT/Myb domain
PfamPF002498.9E-141463IPR001005SANT/Myb domain
CDDcd001679.96E-151664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRTPCCDKN GLKKGPWTPE EDAKLTQYIH AHGAGNWRNL PKNAAERLPG RTDNEIKNYW  60
NTHIRKRLLR MGIDPVTHAP RLDLLDLSSL FNSPQLSLLR LLNPEALRLA ATLVSSNGGV  120
DAQLMLNSQL QNQLQAAPPI QPNHFENIII DQQIPPNINN NSFHNHQSQY QQVFQDDLMP  180
TANASDFGQI RADLSENSSF QSMNTNSSGS NNNNFNSLSS SPTLNSIGNG GGEDERESFC  240
SDLLRFEIPE SLNFDDFM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594390.0KF059439.1 Salvia miltiorrhiza MYB-related transcription factor (MYB85) mRNA, complete cds.
GenBankKF0595490.0KF059549.1 Salvia miltiorrhiza MYB-related transcription factor (MYB85) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027172104.15e-74transcription factor MYB102-like
RefseqXP_027172105.15e-74transcription factor MYB102-like
TrEMBLA0A059PRV91e-156A0A059PRV9_SALMI; MYB-related transcription factor
STRINGMigut.M00356.1.p4e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.15e-38myb domain protein 74
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]