PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020648-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 238aa MW: 27172.1 Da PI: 8.6898

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020648-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.8	1.2e-28	8	62	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt+eLH+ F +av+q+GG+++AtPk il++m ++gLt+ hvkSHLQkYR+ SMil_00020648-RA_Salv 8 KERLKWTKELHDLFEKAVNQIGGPDRATPKGILKAMAIPGLTIFHVKSHLQKYRM 62 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-27	5	63	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.67E-17	6	62	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	8	62	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-8	10	61	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-18	95	139	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MGSHRSSKER LKWTKELHDL FEKAVNQIGG PDRATPKGIL KAMAIPGLTI FHVKSHLQKY 60 RMSVFTREED HTKGKLERRS VSEMLPNFCA LSGAQLNEAL LIQMEAQRRL SDQLEVQKSL 120 KMKIEAQGRF LDKIMEEYKN RSPAGTKPYS PILSLPSLSD ESDSDVEDVS EISSKEDFQP 180 PKRIKIQQHH NLPCFNLDSH HLNLFSVDGI TNQELAFPWV DRALSPSPLL GMYNHLNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	8	65	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077547.1	1e-114	myb family transcription factor PHL7
Refseq	XP_011077550.1	1e-114	myb family transcription factor PHL7
Refseq	XP_020549678.1	1e-114	myb family transcription factor PHL7
TrEMBL	A0A022QJI3	1e-105	A0A022QJI3_ERYGU; Uncharacterized protein
TrEMBL	A0A4D8Y7K5	1e-104	A0A4D8Y7K5_SALSN; Uncharacterized protein
STRING	Migut.L02017.1.p	1e-106	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-47	G2-like family protein