PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020672-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YC

Protein Properties

Length: 131aa MW: 14993.5 Da PI: 8.9238

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020672-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	47.5	4e-15	67	123	18	74
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ SMil_00020672-RA_Salv 67 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITVQRGAKTV 123 689*****************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.18E-15	54	128	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.5E-25	63	128	IPR009072	Histone-fold
Pfam	PF00808	8.4E-19	69	129	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
LLQYLSFGSE SKSLFLTPFH LLQSFDQSFF YFSCHISSPS LNFVHLYSQL NFCYGCRNLT 60 AMKKKLDTRF PAARIKKIMQ ADEDVGKIAM AVPVLVSKAL ELFLQDLCDR TYDITVQRGA 120 KTVSSLHLWV L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-21	59	128	1	70	Transcription Regulator NC2 alpha chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027107284.1	5e-39	dr1-associated corepressor-like
Swissprot	Q14919	6e-20	NC2A_HUMAN; Dr1-associated corepressor
TrEMBL	A0A4D9BT57	1e-47	A0A4D9BT57_SALSN; Uncharacterized protein
STRING	XP_010670583.1	1e-37	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-39	nuclear factor Y, subunit C11