PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020680-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 236aa MW: 27096.5 Da PI: 10.5551

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020680-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.1	1e-15	137	222	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ ++ps+v+ +l l +f+++ + +++ ++l de+g++W v + rk++ l++GWk+F+ +++L +gD +vF+l++ + SMil_00020680-RA_Salv 137 FVRSMLPSHVSGGFWLGLYSDFCRRRL-P-RNDGVVQLVDEEGEEWPVVYLARKTG----LSGGWKKFAVDHNLVDGDALVFQLIKPT 218 778899***************8883.3.33447***********666665....**********************9876 PP EE.. CS B3 89 efel 92 f+ SMil_00020680-RA_Salv 219 VFKV 222 6633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-21	129	227	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-24	130	227	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.45E-23	135	226	No hit	No description
SMART	SM01019	7.0E-22	137	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.8E-14	137	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.296	137	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
LLKKIGVKMV MAKVKYEAVR QQRLEENKKR IEELHLPLLS QALKDSSSPK PSPMKKTKPR 60 IARTEVVPVR RSLRFSNKSA PEYKEITVYD RVHIPRRMTH KTRDLSNRVY ASDQARDIAM 120 KKAEEIESSL GSNHPSFVRS MLPSHVSGGF WLGLYSDFCR RRLPRNDGVV QLVDEEGEEW 180 PVVYLARKTG LSGGWKKFAV DHNLVDGDAL VFQLIKPTVF KVFIVRVDSE TIKVEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083863.1	1e-137	B3 domain-containing protein At5g42700
Refseq	XP_011083864.1	1e-137	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	9e-71	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1S3X3J5	1e-112	A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like
TrEMBL	A0A1U7X950	1e-112	A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like
STRING	XP_009783454.1	1e-113	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-68	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]