PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020886-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 584aa MW: 65126.8 Da PI: 4.3634

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020886-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.7	4.1e-31	32	146	2	106
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknra 77 pGfrF Ptd el+ +yL+kk++++++ + + ik++++ +v+PwdL+ k +++ewyfF++rd+ky++g+r+ r SMil_00020886-RA_Salv 32 LPGFRFVPTDTELILYYLQKKINNEPILC-DGIKDTNLKQVNPWDLQGsrffvfkillskFPKLGDDEWYFFTPRDRKYPNGERPDRG 118 59**********************999.88**********945799998877752233889***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktL 106 +sgyWkatg dk+v++ ++ +vg kk L SMil_00020886-RA_Salv 119 SESGYWKATGADKPVIV-GDVTVGFKKAL 146 *************.999****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-36	24	158	IPR003441	NAC domain
PROSITE profile	PS51005	32.002	31	187	IPR003441	NAC domain
Pfam	PF02365	9.1E-15	33	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MDDQETEQRH SEDEQIPAPA APMAVPEWKN YLPGFRFVPT DTELILYYLQ KKINNEPILC 60 DGIKDTNLKQ VNPWDLQGSR FFVFKILLSK FPKLGDDEWY FFTPRDRKYP NGERPDRGSE 120 SGYWKATGAD KPVIVGDVTV GFKKALLDDW VLCRMYEKST RLTNKRKNPN AKEQTDDDWE 180 TAPLENDDDC EIAAAVENLP RIFPENPYPF NYYYHEQNPA YLQDILKQST FAGYQEANPS 240 FSDVYFQLDG IVAPPVEEQG ININSYVNDE PSASGFQQLL PPQPNIASSS TWRSNEASSS 300 YVNDEPSASG CQQPSAQPNI ASSSTWRSNE AFFPASINTN IYPPIYNQID AQQDMKIDAQ 360 ENTSRGIGRY LGHPLRIDGA SAGRDFDTCR RNKAGIQAVN PDDGVVIKEG RKRVLETLHA 420 PVDGAVVDAL VTTVENSFVV SGLGVEKSAA AGTKHDKPAV NDKEVDEDIE METPAGNPAE 480 IVTTAADLES EGNNSQAKSL ALVNAKQAKK LEQANELVAG VTCLFPVFIS YVSMDDGMFG 540 FYCNACRMMM MMMTMMMMCD YDVSQGMQMP VDQAPPKRRG CPPE

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MDDQETEQRH SEDEQIPAPA APMAVPEWKN YLPGFRFVPT DTELILYYLQ KKINNEPILC  60
DGIKDTNLKQ VNPWDLQGSR FFVFKILLSK FPKLGDDEWY FFTPRDRKYP NGERPDRGSE  120
SGYWKATGAD KPVIVGDVTV GFKKALLDDW VLCRMYEKST RLTNKRKNPN AKEQTDDDWE  180
TAPLENDDDC EIAAAVENLP RIFPENPYPF NYYYHEQNPA YLQDILKQST FAGYQEANPS  240
FSDVYFQLDG IVAPPVEEQG ININSYVNDE PSASGFQQLL PPQPNIASSS TWRSNEASSS  300
YVNDEPSASG CQQPSAQPNI ASSSTWRSNE AFFPASINTN IYPPIYNQID AQQDMKIDAQ  360
ENTSRGIGRY LGHPLRIDGA SAGRDFDTCR RNKAGIQAVN PDDGVVIKEG RKRVLETLHA  420
PVDGAVVDAL VTTVENSFVV SGLGVEKSAA AGTKHDKPAV NDKEVDEDIE METPAGNPAE  480
IVTTAADLES EGNNSQAKSL ALVNAKQAKK LEQANELVAG VTCLFPVFIS YVSMDDGMFG  540
FYCNACRMMM MMMTMMMMCD YDVSQGMQMP VDQAPPKRRG CPPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-30	30	158	14	168	Stress-induced transcription factor NAC1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	7e-33	NAC domain containing protein 47