PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020906-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 1105aa    MW: 122172 Da    PI: 6.587
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020906-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22132233199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae++       ++++++  +++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+
  SMil_00020906-RA_Salv 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--EIVARDLHDSVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVL 217
                            99*****************************96555544..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++++l+++++r+
  SMil_00020906-RA_Salv 218 FI--RDEKQQLLLGIRRA 233
                            **..5688889****997 PP
2Auxin_resp85.61e-282763421883
             Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            +as+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+
  SMil_00020906-RA_Salv 276 KASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDTVRWKNSQWRNLQ 342
                            789************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-42122257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40123247IPR015300DNA-binding pseudobarrel domain
CDDcd100177.73E-19131223No hitNo description
SMARTSM010195.7E-23132234IPR003340B3 DNA binding domain
PfamPF023622.3E-20132233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998132234IPR003340B3 DNA binding domain
PfamPF065073.0E-24276342IPR010525Auxin response factor
PROSITE profilePS5174527.0389931077IPR000270PB1 domain
PfamPF023091.7E-69941078IPR033389AUX/IAA domain
SuperFamilySSF542776.96E-710091071No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MKTASTGAGG QPANAAAVEV EKKNINAELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA  60
SMKKDVDAQI PNYPNLPSKL LCRLHNVTLH ADPETDEVYA QMTLQPVPSF DKDALLRSDL  120
SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ EIVARDLHDS  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAALPM LRPTTALSPS FTIQGKASPS EFVIPLAKYY KAVCSNQISL  300
GMRFRMMFET EESGTRRYMG TITGISDLDT VRWKNSQWRN LQVGWDESTA GEKRNRVSIW  360
EIEPVTAPFF ICPTPPFFRS KRPRQLGMPD DESPDLDNIF RRTMPWLGDD FGMKDPQALT  420
GLSLAQWMNM QQSPSLANPM QPNYMSPLSG SVLQNLTGAD ISRQLGMPGT QIPQQNNLQF  480
NAQRQMQPSQ QLDQLQKLQP STLSPMGSIM QPQQQLSDMT QSRQNLIGQT LPSSSQVQSQ  540
MLPAQNPIQA QHQSLLSHQL QMNLSQNLPQ QQQQQMLSHS QQQNLMQPQA SDHVNQQLHV  600
PENQIQMQLL QKYHQQQQSM MAQQSAMQQP SQLAQLQDHQ KQQLDIPPSF SKPMSTSQML  660
DVSQTTSSMI PQSHVLSQQM TRNNSQANLR FAQPPQQPKL QQQQQQQQPG MLSELPGHMG  720
QTFQPSAGSS SLLTGAAGGG QSAVTDDVPS CSTSPSTNNC SNGVQLMMNG KNQRATMVGD  780
EIAQSSVTQL NSSGLETIPS SSNLVKDLQQ KSDVKPSLNV SKSQNHGFFA SQTYLNPAGT  840
QIDYLDSSSS ATSVLSQNDL HIPPNNNSMS FNSQSMLFRD ASHDGEVQGD PRSNLAFGAN  900
IENQLGMPMM PDTLITKDMV GSGKDFATDV PSGGGMLSGF DNPKEAQPEL SSSMVSQSFG  960
VPDMTFNSID STINDGSFMN RGAWPPPQIP RMRTYTKVYK RGAVGRSIDI TRYAGYDELK  1020
QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ  1080
MSLDGDFGNS VLPNQACSSS DNGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582136347388Auxin response factor 5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367420.0KX036742.1 Salvia miltiorrhiza auxin response factor ARF22 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
TrEMBLA0A191T8U10.0A0A191T8U1_SALMI; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19