PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020910-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YA

Protein Properties

Length: 213aa MW: 23763.6 Da PI: 9.6587

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020910-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2e-32	122	178	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl +k rkpylheSRh hAlrR+Rg+gGrF SMil_00020910-RA_Salv 122 EEPVFVNAKQYHGILRRRQSRAKAESENKL-SKPRKPYLHESRHLHALRRARGNGGRF 178 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.6E-35	120	181	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.302	121	181	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-27	123	178	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-23	124	146	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	126	146	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.2E-23	155	178	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSACLRASFS IMTSSVHSLS DNSEADEQQK HTESYLQPSS PAKGMCHTGI ASPGMHYASP 60 AQVGVGNAQT AYPYPDPYYR SIFAPYETQP YPAQPYPAQP MVHLQLMGIQ QAGVPLPSEA 120 VEEPVFVNAK QYHGILRRRQ SRAKAESENK LSKPRKPYLH ESRHLHALRR ARGNGGRFQK 180 KNDNQKKKDV ESSEKYHDNI NLNSEKDAPK SAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	121	178	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827460.1	1e-116	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q84JP1	6e-62	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A4D9A4N0	1e-132	A0A4D9A4N0_SALSN; Uncharacterized protein
STRING	Migut.M01893.1.p	1e-113	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-58	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]