PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021028-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 535aa    MW: 57583 Da    PI: 5.7982
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021028-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.78.9e-11158214155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  SMil_00021028-RA_Salv 158 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 214
                            57*******************5444.2455535555.7799999*************98 PP
2AP2323.1e-102232631255
                    AP2  12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  SMil_00021028-RA_Salv 223 HGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 263
                            69*****988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-8158214IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-14158223IPR016177DNA-binding domain
CDDcd000181.05E-17158223No hitNo description
SMARTSM003801.9E-15159223IPR001471AP2/ERF domain
PROSITE profilePS5103217.991159271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-11159223IPR001471AP2/ERF domain
PRINTSPR003674.6E-6160171IPR001471AP2/ERF domain
CDDcd000181.38E-19222273No hitNo description
PfamPF008475.3E-5223263IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-13223272IPR016177DNA-binding domain
SMARTSM003801.0E-20224277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-14224271IPR001471AP2/ERF domain
PRINTSPR003674.6E-6253273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSSMNNWLGF SLSPQELQDH QNPQNLGFNS DEISTAQISN ESCFDLPSDS AIPSLNLPAP  60
PFGILEAFNR NPHSQDGGGG ASSHTNLPMI TNWLTAPPAE SSEAAAAAPA ASAALSLSMS  120
TGSQSSSPLP PDPKLGSEAA AIESVPRRSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS  180
CRREGQSRKG RQGGYDKEDK AARAYDLAAL KYWGTTTTTN FPHGRWQARI GRVAGNKDLY  240
LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKSI LESSTLPIRG AAKRLKDAEN  300
AEMALDLHRA SEASLNLHLT EGQMSGFGST NAAHGWPTVA FQQAQPLSMY PYAHQMLWCK  360
QEHDPYVGHA YNEINHQLQL GNTQNFLQPS VLHNIMGLDS SSIEHSSGSN SAVYGSNGGG  420
GDGSVVPTMG ALIVQDGNNH QGHGNGYLGN DEGKSLDYES MFGSSADAYQ QARNLYYQCQ  480
QSSSNLAKAT TNLYDQGSTS TNWIPTAVPT GSAAARTNNA AGNQGASTFT VWNDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077145.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A4D9ASR80.0A0A4D9ASR8_SALSN; AP2-like factor, ANT lineage
STRINGEOY097221e-179(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.14e-86AP2 family protein