PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021123-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 201aa    MW: 22343.9 Da    PI: 10.4981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021123-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.1e-2177127155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            sgy+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++++g
  SMil_00021123-RA_Salv  77 SGYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRMKG 127
                            89********.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SuperFamilySSF541716.54E-2277136IPR016177DNA-binding domain
PfamPF008474.1E-1577127IPR001471AP2/ERF domain
CDDcd000182.05E-1577136No hitNo description
PROSITE profilePS5103222.33978135IPR001471AP2/ERF domain
SMARTSM003803.5E-3178144IPR001471AP2/ERF domain
PRINTSPR003676.8E-117990IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2979135IPR001471AP2/ERF domain
PRINTSPR003676.8E-11101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNKNSNFDLS ENGHELLHFH PSSSSCNRSP NRVEIDYAEI DRRSPPVLEG IAAVVGERVL  60
FGDKVERESG SNRRKTSGYR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT AEEAARAYDA  120
AARRMKGSGA RTNFQIPPIL PSPSSSCSDQ PRRRIRAKTR GKCSVVTCAA HLFSPNFAAD  180
ATNDVGLELQ DGGFGNKNRV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-17791341571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150426e-34AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978247.17e-47PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M54e-32ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A4D9AD222e-72A0A4D9AD22_SALSN; EREBP-like factor
STRINGEOY259763e-46(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-28ERF family protein