PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021276-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 200aa    MW: 22767.9 Da    PI: 9.9485
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021276-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.96e-251771155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           kprl+Wtp+LH+rFv+av+qLGG+ekAtPk+++++m+++gLtl +     QkYR+
  SMil_00021276-RA_Salv 17 KPRLKWTPQLHRRFVDAVKQLGGAEKATPKSLMRVMGIQGLTLIESCLLVQKYRV 71
                           79*****************************************9999999****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-221574IPR009057Homeodomain-like
SuperFamilySSF466893.23E-91670IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-151770IPR006447Myb domain, plants
PfamPF143791.6E-21103149IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MALDNQEMKL VLSSDAKPRL KWTPQLHRRF VDAVKQLGGA EKATPKSLMR VMGIQGLTLI  60
ESCLLVQKYR VGRSQQSQSF HHDKPQENER KKSKLEEEKI NDVQIAEALK MQMEVQRKLE  120
QQMEVQRHLQ LRIEAQGRYL QSVLNKAKAT HLLHSASDNS SLTSSDTSQH KTTKTIDLNL  180
NEFDSGPTTG INLNDFASTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-141673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075513.11e-64myb family transcription factor PHL8-like
SwissprotQ9SQQ92e-44PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2G9H8E13e-60A0A2G9H8E1_9LAMI; Uncharacterized protein
STRINGEOY019004e-55(Theobroma cacao)
STRINGXP_010108678.14e-55(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-46G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]