PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021481-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 335aa    MW: 35034.8 Da    PI: 9.1305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021481-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-11270315655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  SMil_00021481-RA_Salv 270 SIAERERRTRISGKLRKLQDLVPNM----DKQTSYADMLDLAVQHIKTLQ 315
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.96264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14267329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-11268319No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13269326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYPSSTSSSS QGSMGSSSNG GGGGGLIRYG SAPGSLLTAA VDSATREFSA LGPQAQPGPA  60
RYLASESAAM ARRGNPSGEE HATANTTIGL QPSYGFGGGA SSTALLRQSS SPAGFLNHLA  120
TAAGDRNAGF SVTRGIGSYN SKGIGETGGG ISRLNSQLSF TGKESLSRIS EEAEAAAMDN  180
HQKKSYATTS GGGAFGMWEP SSNPIMFSVA QSNRGKNVGD GLDAIESQFQ FSISQTAQDM  240
ASMEKLLNIP QDSVTCKIRA KRGFATHPRS IAERERRTRI SGKLRKLQDL VPNMDKQTSY  300
ADMLDLAVQH IKTLQDQVEK LNHDLDSCSC GCKKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574940.0KP257494.1 Salvia miltiorrhiza clone 61 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022873721.11e-116transcription factor bHLH128-like isoform X1
TrEMBLA0A0H3YBT20.0A0A0H3YBT2_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009620076.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-66bHLH family protein