PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00021489-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 288aa MW: 32378.1 Da PI: 7.0324

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00021489-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.3e-53	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+v+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+r++ky++g+r+nra++sgyWkatg+ SMil_00021489-RA_Salv 18 LPPGFRFHPTDEELLVHYLKKKAAAAPLPV-AIIAEVDLYKYDPWELPSKASFGEQEWYFFSPRERKYPNGERPNRAATSGYWKATGT 104 79**************************.88***********988899****************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++l++ ++++ g+kk Lvfy g+ pkg+kt+W+mheyrl SMil_00021489-RA_Salv 105 DKPILTAnGTQKLGVKKALVFYGGKPPKGVKTNWIMHEYRL 145 *9867778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-63	14	180	IPR003441	NAC domain
PROSITE profile	PS51005	61.511	18	179	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
LIDMEGTSSS GGNHQPRLPP GFRFHPTDEE LLVHYLKKKA AAAPLPVAII AEVDLYKYDP 60 WELPSKASFG EQEWYFFSPR ERKYPNGERP NRAATSGYWK ATGTDKPILT ANGTQKLGVK 120 KALVFYGGKP PKGVKTNWIM HEYRLVGDNS TANKPPGINL PKKSSSRLDD WVLCRIFKKN 180 SPTSSTEDYS RIPVVPEKAS DYSNFFDGNP MPAEETMFPA KEWQVHDDSL NPSSSSSDHH 240 RNISYISLLN QQYPQTIFHQ NSLVNSAGDD DDDAALHQSY QLPTSQFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-72	15	181	17	170	NAC domain-containing protein 19
3swm_B	1e-72	15	181	17	170	NAC domain-containing protein 19
3swm_C	1e-72	15	181	17	170	NAC domain-containing protein 19
3swm_D	1e-72	15	181	17	170	NAC domain-containing protein 19
3swp_A	1e-72	15	181	17	170	NAC domain-containing protein 19
3swp_B	1e-72	15	181	17	170	NAC domain-containing protein 19
3swp_C	1e-72	15	181	17	170	NAC domain-containing protein 19
3swp_D	1e-72	15	181	17	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848590.1	1e-119	PREDICTED: NAC transcription factor 25
Swissprot	Q8GY42	1e-100	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A2G9HQE1	1e-115	A0A2G9HQE1_9LAMI; Uncharacterized protein
STRING	Migut.M01170.1.p	1e-118	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-87	NAC domain containing protein 25