PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021663-RA_Salv
Common NameSPL10
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 858aa    MW: 95048.2 Da    PI: 6.8039
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021663-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.81e-401087178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                           +Cqve+C adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk+q+
  SMil_00021663-RA_Salv 10 VCQVEDCGADLSKAKDYHRRHKVCQMHSKASKALVGNQMQRFCQQCSRFHALLEFDEGKRSCRRRLAGHNKRRRKTQT 87
                           6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.7E-33472IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.71885IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.12E-37991IPR004333Transcription factor, SBP-box
PfamPF031102.0E-291184IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.7E-5163192IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.38E-5638749IPR020683Ankyrin repeat-containing domain
CDDcd002049.82E-5639749No hitNo description
Gene3DG3DSA:1.25.40.202.7E-5642752IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
LAGASSNRAV CQVEDCGADL SKAKDYHRRH KVCQMHSKAS KALVGNQMQR FCQQCSRFHA  60
LLEFDEGKRS CRRRLAGHNK RRRKTQTDNM SNNSTVDNNQ TSNYLLMSIL KILSSMHSNR  120
SNHRDDQDLL SHLLQGLASQ GSLHWERNIS AHLQESPDLL NNLASVGNSE LVSMLISNGS  180
PGQTSRQEHC IALGDEMPQK IGNLHSTSQR PGIVLHTQAG SQYAQGLETS GGRSKLNNFD  240
LNDIYVDSDD GTDDMERSTA PQGLGAVSIG CPSWVQQESH QSSPPQTSGN SDSASAQSPS  300
SSSGEAQSHT DRIVFKLFGK EPSDFPIVLR SQIFDWLSHS PSDIESYIRP GCVILTIYLR  360
LSESAWEELY CDLSSSISRL LNFSDDVNFW STGWIYARVQ NQMAFVHNGQ VVVNTSLPLG  420
TDSFSSILSI KPIAVASSGK AQFIVKGVNL SRPSSRLLCA LEGNYLVANS ESMEHVDSLE  480
HVQCLKFSCS IPAVTGRGFI EVGYSTHCKV EDHGLSSSYY PFIIAEENVC AEIRMLEKEI  540
ELIEEDRLQR GTGRIAARSQ AMEFIHEMGW LLHKYQLMSR SENEESNLDF FPFERFKCLV  600
EFSMDRDWCS VVNKLLEILF SGTVSSGEKP FLKFAMSEMS LLHRAVRKNS RPLVGMLLRY  660
VPEKIADELS SEYGSLVSGY LFRPDVAGPG GLTPLHVAAG RDGSEDILDA LTDDPGKVGI  720
DAWKSALDST GFTPENYARL RGHYSYIHLV QRKMNKKAPS GHVVVDISDT LSESSINQKT  780
NAATFEIAAR SQTKPCGVCA QNLAYRSGSR TLLYRPTMLS MLAIAAVCVC VALLFKSSPR  840
VLFVFRPFSW EMLEYGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29484484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378860.0KF437886.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 10 (SPL10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079486.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A075FJ610.0A0A075FJ61_SALMI; SQUAMOSA promoter binding protein-like 10 (Fragment)
STRINGVIT_07s0005g02260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza.
    J Integr Plant Biol, 2014. 56(1): p. 38-50
    [PMID:24112769]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]