PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021680-RA_Salv
Common NameWRI10
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 417aa    MW: 45842.6 Da    PI: 9.8505
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021680-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.9e-17104153155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SMil_00021680-RA_Salv 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 153
                            78*******************......55************************997 PP
2AP239.71.2e-12196243152
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                            s+y+GV+ +k  grW+A+   +    +  k+ +lg fg++ eAa+a+++a+ k
  SMil_00021680-RA_Salv 196 SKYRGVTLHK-CGRWEARMGQF----IGkKYMYLGLFGSEVEAARAYDKAAIK 243
                            89********.7******6653....235**********99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-15104161IPR016177DNA-binding domain
PfamPF008474.5E-9104153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-17105161IPR001471AP2/ERF domain
SMARTSM003807.5E-33105167IPR001471AP2/ERF domain
CDDcd000182.57E-11105160No hitNo description
PROSITE profilePS5103217.82105161IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-15196256IPR016177DNA-binding domain
PfamPF008472.5E-8196243IPR001471AP2/ERF domain
CDDcd000182.35E-23196256No hitNo description
Gene3DG3DSA:3.30.730.102.2E-14197255IPR001471AP2/ERF domain
SMARTSM003802.1E-28197260IPR001471AP2/ERF domain
PROSITE profilePS5103215.092197254IPR001471AP2/ERF domain
PRINTSPR003676.1E-6198209IPR001471AP2/ERF domain
PRINTSPR003676.1E-6236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MKKSVSTLNF SILDKHVIEI EDDANNNVNS SGNELQLFPI GTSPPSPTPA MVRAKYWLNL  60
SVPEVSGGGS GVELGIYKAQ LPANAPVQPP QAKKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF TIGDYDEEMK QMKSLTKEEF  180
VHILRRQSNG FARGSSKYRG VTLHKCGRWE ARMGQFIGKK YMYLGLFGSE VEAARAYDKA  240
AIKSNGREAI TNFELSNYDR EMNFNSGNGG NGSSLDLNLG ISLSSDGPQG NDTTRNPHFP  300
IQPSEFPDGK RLKVEPISAP QELMQKYPPM WAGIYAGFAP NSKELATRMS GEAVPLPGYS  360
SNWQWKMPSH GMVTPVPVMA SSAASSGFSP ATSPYFSSVV PLTNRAQFPA TAFHSLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844610.0KJ784461.1 Salvia miltiorrhiza AP10/EREBP Transcription Factors (WRI10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548798.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_020548799.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ84TB52e-98AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0G2SJH40.0A0A0G2SJH4_SALMI; AP10/EREBP Transcription Factors
STRINGMigut.F02018.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-94related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]