PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00021800-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 229aa MW: 26673.3 Da PI: 6.3139

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00021800-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.4	1e-26	118	167	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++le+++kyF+ pi+ AAkeL+v+lTvLK++CR+++I+RWPhRkiksl SMil_00021800-RA_Salv 118 SALQLEEIQKYFDFPITRAAKELNVGLTVLKKRCRELNIARWPHRKIKSL 167 6799********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.382	104	188	IPR003035	RWP-RK domain
Pfam	PF02042	8.2E-23	120	167	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MASTGIKLEN QNEVGCFFLE EPIPPLGCWE QQFACVEGFN LGLHGLLEYE QFPLAHQSSN 60 VELNDFEDFS GDLWVFDDHP SFHNDPNNNI ANPDNITEQE ESLTPNDVVR RNGRHKSSAL 120 QLEEIQKYFD FPITRAAKEL NVGLTVLKKR CRELNIARWP HRKIKSLKSL IHNVKELGLT 180 NEIEMLEEHK KMVERIPEME LTERTKKLRQ ACFKANYKKR RSLQQIVFP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858066.1	1e-81	PREDICTED: protein RKD4
TrEMBL	A0A2G9HV85	2e-98	A0A2G9HV85_9LAMI; Uncharacterized protein
STRING	EOY23580	5e-64	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-45	RWP-RK domain-containing protein