PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00021916-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MIKC_MADS

Protein Properties

Length: 143aa MW: 16805.2 Da PI: 6.7952

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00021916-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39	1e-12	32	59	24	51
HHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 24 AeELSvLCdaevaviifsstgklyeyss 51 A+E+S+LCda+v +i+fs++gkl+ey++ SMil_00021916-RA_Salv 32 AHEISILCDADVGLIVFSTKGKLFEYAT 59 9*************************86 PP
2	K-box	78.7	1.5e-26	76	143	2	69
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++++ k+ + + +s++ e+akLk+++e Lqr+qRh++GedL+sLs+keLq+Le+qL+ slk+iR++K SMil_00021916-RA_Salv 76 AERQLKEPDLESPASWTLEHAKLKARVEVLQRNQRHYMGEDLDSLSMKELQNLEHQLDVSLKHIRTRK 143 556666666677899****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0091	17	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.33	31	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-16	31	91	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.3E-9	32	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	12.476	88	143	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.3E-19	90	143	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MVTVQMTWRS YGDSETMVRH VDGIPLPRPI RAHEISILCD ADVGLIVFST KGKLFEYATD 60 SCMERILERY ERYSYAERQL KEPDLESPAS WTLEHAKLKA RVEVLQRNQR HYMGEDLDSL 120 SMKELQNLEH QLDVSLKHIR TRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086917.1	7e-73	truncated transcription factor CAULIFLOWER A
Refseq	XP_011086918.1	7e-73	truncated transcription factor CAULIFLOWER A
Swissprot	Q42429	2e-65	AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A4D9BJ37	3e-73	A0A4D9BJ37_SALSN; MADS-box transcription factor, plant
STRING	XP_009625854.1	6e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA499	23	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-58	AGAMOUS-like 8

Publications ? help Back to Top
Kang SG,Hannapel DJ Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]