PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021923-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 388aa    MW: 43811.7 Da    PI: 5.8798
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021923-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35141042101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k+ye+++d+ +++++sws++g+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ ++         weF++++F +g
  SMil_00021923-RA_Salv  14 FLVKTYEMVDDPMTNSVVSWSHTGQSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKTDPDQ---------WEFANEEFIRG 92 
                            9***************************************************************9998.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +++ll++i r+k
  SMil_00021923-RA_Salv  93 QQHLLKNIYRRK 104
                            **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-39798IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDGSNGSSSS PAPFLVKTYE MVDDPMTNSV VSWSHTGQSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKTDPD QWEFANEEFI RGQQHLLKNI YRRKPIHSHS GQGNVAPLSD  120
SEREHFEKEI QQLKGEKVLL QSEVERRRYE SQGYEHQLSC LRQTLQNIDH RQRQLMISLA  180
QLLEKPSTME HSEFQRKKRR SVALNFLQGE GLQGEDRGMS FLGNSGALSL PLMNLEQVEK  240
LDSSLNFWEK FIHGVQAPAE EFHDFRLHPT RSPVITASSG DSDLNAHMSA STSQDCHSSP  300
ELVASSTYVG SPAISSICID LDSRLKPVGI DVNISPTKTP DDGTPKDREQ DGSIPSVAAG  360
LNDVFWQQFL TEAPGSSMAQ EVQSERRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-26310319129Heat shock factor protein 1
5d5v_B5e-26310319129Heat shock factor protein 1
5d5v_D5e-26310319129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554487.10.0heat stress transcription factor A-4b
TrEMBLA0A4D9ATP70.0A0A4D9ATP7_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.H02116.1.p1e-171(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-84heat shock transcription factor A4A