PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022082-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 556aa    MW: 60451.1 Da    PI: 5.888
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022082-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-15274325155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  SMil_00022082-RA_Salv 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 325
                            57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-18274334IPR016177DNA-binding domain
CDDcd000182.12E-25274335No hitNo description
PfamPF008477.3E-10274325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18275333IPR001471AP2/ERF domain
PROSITE profilePS5103219.348275333IPR001471AP2/ERF domain
SMARTSM003803.5E-33275339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MASSMNNWLG FSLSPQELQD HQQHPQIGSF TSDEISTAQI SGESCFHLPS DSPIPSLNLP  60
APPFGIMEAF NRNNNHSQDW NTFSCSSSQN LEDQNRPKLE NFLGVHQENS YNIYQESEAA  120
SHSNNNNNSS NNGGNIGLSM ITNWLRNNPT PPHAAENEAA PPPPPPAAAA AQTLSLSMST  180
GSQSSSPLPS DGKLADEGQI VAAAAAATES VPRKSIDTFG QRTSIYRGIG GQGDMRXLQI  240
SNYEKEIEDM KNMTRQEFVA SIRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  300
LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFEINRYDVK SILESTTLPI GGAAKRLKDA  360
EKAEMALNLQ RANESSLNLA TYANPNGGHV SWPTIAFQQA HQPLVGATAY PYAHQRLWCK  420
PELDSEISHG LHNFLQPSSV LHNIMAVDSS NMEHGYGSTT VMGGTTVIVE NDDHGDHKNL  480
EYEAMFGSGD AYQQARNFYY QTSPSNLAKS SGNNLYDQAA AAAAAASASA NWNIPTAVPT  540
RGNNNMASTF TMWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084678.11e-170AP2-like ethylene-responsive transcription factor AIL1 isoform X2
RefseqXP_027183775.11e-170AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8L3U34e-94BBM1_BRANA; AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A4D9A6I80.0A0A4D9A6I8_SALSN; AP2-like factor, ANT lineage
STRINGcassava4.1_032986m1e-162(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.17e-82AP2 family protein