PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022302-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 913aa MW: 101794 Da PI: 4.9194

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022302-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	95.8	3e-30	545	595	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+is++dl++yFs+++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ SMil_00022302-RA_Salv 545 EKNISMSDLQQYFSGSLKDAANSLGVCPTTLKRICRQHGIARWPFRKIKKV 595 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.848	529	615	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-26	547	595	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.1E-20	801	881	No hit	No description
PROSITE profile	PS51745	20.208	802	894	IPR000270	PB1 domain
SMART	SM00666	6.2E-19	802	884	IPR000270	PB1 domain
SuperFamily	SSF54277	1.5E-18	802	884	No hit	No description
Pfam	PF00564	1.3E-15	803	882	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MFNSSASPQN LVTSEMEGTV ASDSKYSPSC FVELMNYEEH DEWSISLSNL SDQMFPSANL 60 SPLDEVDSME DYISRSRELS YEDRVSFEGG MMALQEMDVD GIGDLDGKMY KCSEKRNTTD 120 VERSVIPRPL RPSLDEKMSK ALHLCIRSFG GGALAQVWVP MRNGDEYVLS TSGQPFLHDG 180 PLSEYREISR LFSFAAEPGT SSLLSLPGRV FTSKAPEWTS NLMYYSKAEY LRVQHAIDHD 240 VRGSIALPVF EENLDERSCC AVLEIVTTEE KPNFDSEMEN INRALQAVDL SSRRSPWLSP 300 QSLSSNQNAA LAEIKDILYA VCRAHRLPLA LTWIPCSYTK NAVLNETNRG QIRILCLKET 360 TCYWNDACME GFVHACTNHF LEEGKGLVGK ALQSNEPFFY PDVKEFHVSE YPLVHHARKL 420 GLSGAVAIRL RSSYTGEDDY VVEFFLPVNL NGDKAQLLLV KNLLDNVSTI CTSLSKVSDT 480 ELVEEKKSDI QLLNCRTKDI STADLLVRSF EQPVINDELL STNRNSKQTM VGFSRQMKKK 540 RNTSEKNISM SDLQQYFSGS LKDAANSLGV CPTTLKRICR QHGIARWPFR KIKKVDRSLK 600 KIQGMLESVP GVEGGLEFDP TKGGVVAMFS MTGEDLDRGR NLLLTSRSNF CEQSNMVVQN 660 SVARGVIDVE REDESKLAAL DMGPSWPASL NTMPWMTPST TPNDSFLSQA GNSGWKTCSG 720 NDRTKNSDSD FVSGCSSSVI GGDEIDNGTI RTSKQASSDT TDSSHVSESM LMMSVSSSSS 780 GSFDENSHVR RAAASSGCGG AKITVKATYK ENTVRFKFEP AAGCFELYSE VGKRFELQTG 840 EFQLRYLDDD EEWVLLVTDS DLTECVEVLE FLRTRTVKFQ VRRIEELRVN CREIAPRFPT 900 INPLCYNGDD AKA

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MFNSSASPQN LVTSEMEGTV ASDSKYSPSC FVELMNYEEH DEWSISLSNL SDQMFPSANL  60
SPLDEVDSME DYISRSRELS YEDRVSFEGG MMALQEMDVD GIGDLDGKMY KCSEKRNTTD  120
VERSVIPRPL RPSLDEKMSK ALHLCIRSFG GGALAQVWVP MRNGDEYVLS TSGQPFLHDG  180
PLSEYREISR LFSFAAEPGT SSLLSLPGRV FTSKAPEWTS NLMYYSKAEY LRVQHAIDHD  240
VRGSIALPVF EENLDERSCC AVLEIVTTEE KPNFDSEMEN INRALQAVDL SSRRSPWLSP  300
QSLSSNQNAA LAEIKDILYA VCRAHRLPLA LTWIPCSYTK NAVLNETNRG QIRILCLKET  360
TCYWNDACME GFVHACTNHF LEEGKGLVGK ALQSNEPFFY PDVKEFHVSE YPLVHHARKL  420
GLSGAVAIRL RSSYTGEDDY VVEFFLPVNL NGDKAQLLLV KNLLDNVSTI CTSLSKVSDT  480
ELVEEKKSDI QLLNCRTKDI STADLLVRSF EQPVINDELL STNRNSKQTM VGFSRQMKKK  540
RNTSEKNISM SDLQQYFSGS LKDAANSLGV CPTTLKRICR QHGIARWPFR KIKKVDRSLK  600
KIQGMLESVP GVEGGLEFDP TKGGVVAMFS MTGEDLDRGR NLLLTSRSNF CEQSNMVVQN  660
SVARGVIDVE REDESKLAAL DMGPSWPASL NTMPWMTPST TPNDSFLSQA GNSGWKTCSG  720
NDRTKNSDSD FVSGCSSSVI GGDEIDNGTI RTSKQASSDT TDSSHVSESM LMMSVSSSSS  780
GSFDENSHVR RAAASSGCGG AKITVKATYK ENTVRFKFEP AAGCFELYSE VGKRFELQTG  840
EFQLRYLDDD EEWVLLVTDS DLTECVEVLE FLRTRTVKFQ VRRIEELRVN CREIAPRFPT  900
INPLCYNGDD AKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091607.1	0.0	protein NLP9 isoform X1
Refseq	XP_011091608.1	0.0	protein NLP9 isoform X1
TrEMBL	A0A4D8ZYZ6	0.0	A0A4D8ZYZ6_SALSN; Uncharacterized protein
STRING	Migut.N03106.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein