PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022386-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 231aa MW: 25974.1 Da PI: 10.7616

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022386-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	14	55	5	32
HHHHHHHHHHHHHHHHHHHHCTSCCC................ CS HLH 5 hnerErrRRdriNsafeeLrellPkas..............k 32 + +E++RR r++ ++L +++P + + SMil_00022386-RA_Salv 14 RKTIEKNRRIRMKALGFKLVSIIPDRHltqpkggkraepnrA 55 5789********************965576666666555540 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-5	13	37	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-5	86	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MKRSEMNSKN KLERKTIEKN RRIRMKALGF KLVSIIPDRH LTQPKGGKRA EPNRAKPNTS 60 RLELGSFKYS GVRARLELDS SFYLVDRARL EFLTHLDQID EAAAYIKTMR ERIDGLKRRK 120 AQLLMNSGAT ECVAKTAAED CSGSELPILT VRALGHGVEV MLVSGQRKNF MLSQVISVIE 180 EEAAQVLSVN ISRVGDNVVH TLHAQVKISR VGVDTSRISD RLHEMISSRA H

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D9A3E4	6e-77	A0A4D9A3E4_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6083	14	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	2e-18	bHLH family protein