PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022426-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 150aa MW: 16397 Da PI: 9.0067

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022426-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	39	73	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ ++ + L++l+ + +K + a++L +A+eYI+ L SMil_00022426-RA_Salv 39 RVSQRVSALQQLVSPY-----GKTDTASVLLEAMEYINFL 73 5666777888888887.....9***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.57E-5	22	78	No hit	No description
PROSITE profile	PS50888	10.912	24	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-10	28	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-7	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MQVKMMQHKR SLVAVNQSTF VPKRLKIDAP LSSKEKKERV SQRVSALQQL VSPYGKTDTA 60 SVLLEAMEYI NFLHEQVKVL SAPYLCSTQA QIEGEEPCSL RAKGLCLVPT CLTLGAASSN 120 GADIWAPIKT SPPNSRRSVS DEAASVITYC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091560.1	2e-76	transcription factor bHLH113 isoform X1
Swissprot	Q7XJU2	7e-48	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A4D8ZPX9	5e-75	A0A4D8ZPX9_SALSN; Uncharacterized protein
STRING	Migut.N03067.1.p	6e-70	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10428	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	3e-50	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]