PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022447-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 261aa MW: 28643 Da PI: 10.2335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022447-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6e-11	117	162	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq SMil_00022447-RA_Salv 117 SIAERERRTRISGKLRKLQDLVPNM----DKQTSYADMLDLAVQHIKTLQ 162 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.96	111	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-14	114	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.81E-10	115	166	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-12	116	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-8	117	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-12	117	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
LNSQLSFTGK ESLSRISEEA EAAAMDNHQK KSYATTSGGG AFGMWEPSSN PIMFSVAQSN 60 RGKNVGDGLD AIESQFQFSI SQTAQDMASM EKLLNIPQDS VTCKIRAKRG FATHPRSIAE 120 RERRTRISGK LRKLQDLVPN MDKQTSYADM LDLAVQHIKT LQDQVEASEI CSNLSETTTT 180 TEGPSPLRAG TTRGGEGEAP GIEIVKERGR GRREREVGVA VEGGRRHGSP LHRRQSSSSE 240 APRVKRSAAV RREARELSRR C

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257558	0.0	KP257558.1 Salvia miltiorrhiza clone 126 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084160.1	1e-73	transcription factor bHLH128 isoform X1
Swissprot	Q9ZW81	2e-49	BH129_ARATH; Transcription factor bHLH129
TrEMBL	A0A0H3Y910	1e-174	A0A0H3Y910_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_009620076.1	1e-68	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6455	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	5e-52	bHLH family protein