PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022543-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 192aa    MW: 20971.8 Da    PI: 8.0151
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022543-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41.1e-284103195
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C++dC l p++     p++q++++ +++k++G++ +l+l++a+p ++r+++++sl+yeA+ r+ +Pv+G+vg+++++
  SMil_00022543-RA_Salv   4 SCNGCRVLRKGCSEDCSLKPCLewlnsPQSQANATLFLAKFYGRAGLLNLIAAAPSHRRPEIFRSLLYEACGRIINPVHGSVGLMSSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaela 95 
                             +  +++++e++
  SMil_00022543-RA_Salv  92 DWPRCHAAVEAV 103
                            **9999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0963109IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCSEDCS LKPCLEWLNS PQSQANATLF LAKFYGRAGL LNLIAAAPSH  60
RRPEIFRSLL YEACGRIINP VHGSVGLMSS GDWPRCHAAV EAVLGGVHLV SPCDIRHAPK  120
GRDRRKRSTS SAAAESEAKF TITGWDHNKD LLVIDEKSGR APSHDSFSAE TVEPSLMSFD  180
DQGTIPEPRL SE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070804.17e-82LOB domain-containing protein 40-like
SwissprotQ9CA309e-57LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A4D9AI992e-85A0A4D9AI99_SALSN; Uncharacterized protein
STRINGMigut.E00341.1.p3e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-58LOB domain-containing protein 42