PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022555-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SRS

Protein Properties

Length: 251aa MW: 27224.3 Da PI: 7.4484

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022555-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	106.8	3.5e-33	61	118	3	60
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60 + ++CqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaa+rrer qq+ SMil_00022555-RA_Salv 61 VEMINCQDCGNQAKKDCEHMRCRTCCKSRGFPCQTHVKSTWVPAARRRERLQQQVVRG 118 56789*********************************************88876544 PP
2	DUF702	88.7	1.3e-27	127	189	92	154
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +sa ++ +e+ ++P+ev+s+avfrcvrvs++dd+ee laYqtav+igGhvfkGiLydqG+++ SMil_00022555-RA_Salv 127 NSAGATGGFEVGQFPPEVNSPAVFRCVRVSAMDDAEETLAYQTAVNIGGHVFKGILYDQGPDS 189 4555566789999************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-55	64	188	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-27	65	107	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.2E-26	139	187	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSGFLSLSHR DDHEEIYNKG FELCQQQQHS KQDVGVSSRQ SYGSGAVELG FDAMSGGVGR 60 VEMINCQDCG NQAKKDCEHM RCRTCCKSRG FPCQTHVKST WVPAARRRER LQQQVVRGEN 120 LKRLRENSAG ATGGFEVGQF PPEVNSPAVF RCVRVSAMDD AEETLAYQTA VNIGGHVFKG 180 ILYDQGPDSR YHGGGGGESS GGSQPHQLAA APPSAVATTS NLNASILDAS MYPNQLSSYM 240 SGTQFFLPPR P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002280777.1	3e-91	PREDICTED: protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	1e-64	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A4D8Y952	7e-94	A0A4D8Y952_SALSN; Uncharacterized protein
STRING	VIT_18s0001g13420.t01	1e-90	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-59	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]