PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022596-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 196aa    MW: 21762.7 Da    PI: 9.5305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022596-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.9e-143075353
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                           r+h+e+E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L ++v+++k+
  SMil_00022596-RA_Salv 30 RSHSEAEKRRRDRINAQLSTLRKLIPKS-----EKMDKAALLGHVVDHVKE 75
                           78*************************8.....8**************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7322776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-143079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-113075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-143097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-103278No hitNo description
SMARTSM003533.1E-123382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-6104170No hitNo description
CDDcd048737.34E-6111171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MENCYWPHDA PPWLLSPAAA ADDRAASASR SHSEAEKRRR DRINAQLSTL RKLIPKSEKM  60
DKAALLGHVV DHVKEQRQRA KEASKSSSSM PSEIDEVIID QHHESEHIKA SICCDDRPEL  120
FAELKAALKP LEATILEAEV TSLGGRIKAN FIISAAMANQ HTLKMALTRL LISSGSGSSG  180
YGTRSKRQRF FYPTSR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575010.0KP257501.1 Salvia miltiorrhiza clone 68 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076673.29e-76transcription factor bHLH51
TrEMBLA0A0H3Y7K31e-142A0A0H3Y7K3_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.F00663.1.p1e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.17e-23bHLH family protein