PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022602-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 318aa MW: 37803.3 Da PI: 6.1475

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022602-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.8	1.4e-18	56	134	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++qe+++Lie+r ++e + + +++ +lWe v+ +mr++g+ r++ qCk kw+nl ryk + ++ + + p+f++l+ SMil_00022602-RA_Salv 56 WSNQETRDLIEMRAQVEWGFTAPQRNRNLWEMVAHRMRDKGYWRTADQCKWKWKNLVSRYKGQEPSDMDT---V---QPFFNELH 134 *************************************************************998888763...3...58888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.758	48	112	IPR017877	Myb-like domain
Pfam	PF13837	2.2E-16	55	135	No hit	No description
CDD	cd12203	1.37E-18	56	117	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MYGTAGDVSS HLRLLPSSSS PGAGTPTITY HHQLMIPLPP PFDDEFPRRD ERLPHWSNQE 60 TRDLIEMRAQ VEWGFTAPQR NRNLWEMVAH RMRDKGYWRT ADQCKWKWKN LVSRYKGQEP 120 SDMDTVQPFF NELHAVFTAR ANRLQQSQAE AVTVVAKGRR LNDASEDQSN EEFTEKQEAE 180 EEVEVDHQAG KGSAVPKQKA GREKRQKTRE EDYPAQPVAN VNKNERVGLR EIMRNFMQQQ 240 QIIDMEWRAS MEKRAEERER FEQEWQQKME ILEKERLMME QAWREREEER RLREERRAEQ 300 RDALLTTLLN KLIHEETT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074149.1	1e-108	trihelix transcription factor GT-3b-like
TrEMBL	A0A4D9BF41	1e-141	A0A4D9BF41_SALSN; Uncharacterized protein
STRING	Migut.E01394.1.p	4e-74	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-26	Trihelix family protein