PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022618-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 194aa MW: 21707.4 Da PI: 5.3671

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022618-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.8e-10	68	111	2	44
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrw 44 +WT eEd+ + +a + + ++ W++Ia ++ g+t +++k+++ SMil_00022618-RA_Salv 68 SNWTREEDKAFENALATYYNDadMWDKIALAVP-GKTIEDLKLHY 111 58*****************************.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.701	62	119	IPR017930	Myb domain
SMART	SM00717	5.5E-6	66	117	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-8	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.92E-8	69	111	No hit	No description
SuperFamily	SSF46689	1.08E-9	69	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-6	69	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MKHSVLFAAY HTKCGFVVVT LDVMVCADAS VGQAFPIASK MDTDWTFDSC SLRTEVDDAA 60 SKDACTSSNW TREEDKAFEN ALATYYNDAD MWDKIALAVP GKTIEDLKLH YEILRRDVEA 120 IESGKVPLPD NPTKASTLKE KKKSEQAQRG DPWTEEEHSQ VASHAQKYFK RLSSAKEGKR 180 LSINDITTVN PEKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-16	70	143	11	85	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012853388.1	2e-46	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	4e-23	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2G9H9E6	1e-53	A0A2G9H9E6_9LAMI; Zuotin
STRING	Migut.N03245.1.p	8e-46	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15159	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.2	4e-28	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]