PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022780-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 166aa    MW: 18149 Da    PI: 10.2199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022780-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000753860123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+++F++   L  H  +H
  SMil_00022780-RA_Salv 38 FECKTCNRRFPSFQALGGHRASH 60
                           89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-836107No hitNo description
PROSITE profilePS501579.8473865IPR007087Zinc finger, C2H2
SMARTSM003550.133860IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-133862IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF139125.2E-1084109IPR007087Zinc finger, C2H2
SMARTSM003551.585107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.80885112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MMMKRSREGS DLDDIQSMAN CLMLLSGSRG GGETNRMFEC KTCNRRFPSF QALGGHRASH  60
KKPRLAATGD DQLLREASPP KPKAHECAIC GLEFPIGQAL GGHMRRHRSA NGQKRLPSPE  120
LSLSPPLAPI VKKSNSTRVL CLDLNLTPSE NKFLFGNAAP AVNCFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020548814.11e-77zinc finger protein ZAT11-like
TrEMBLA0A4D9AZC01e-69A0A4D9AZC0_SALSN; Uncharacterized protein
STRINGMigut.F00795.1.p5e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-40C2H2 family protein