PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022871-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 216aa MW: 24071.9 Da PI: 9.4482

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022871-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.3e-39	23	84	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+alkcprC+stntkfCyynnyslsqPryfCk+CrryWt+GG lrnvPvGg++rknk+sss SMil_00022871-RA_Salv 23 KEQALKCPRCKSTNTKFCYYNNYSLSQPRYFCKSCRRYWTEGGNLRNVPVGGSSRKNKRSSS 84 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-24	16	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-34	25	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDSAQWLQGI GSRNSEKKPR PQKEQALKCP RCKSTNTKFC YYNNYSLSQP RYFCKSCRRY 60 WTEGGNLRNV PVGGSSRKNK RSSSSSISTH KSIPDLSCPP KHSPQNPKIH HGLHLNSSYN 120 DPPLCGTGIS DLFTQNPNLL ISAPVHNSNS AGFPMHELKP STDFSLENRF GNLEPAVQDN 180 PAILFPAVAD YEVEQLRGLQ RDSNGFWTGM LSGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022844511.1	6e-62	dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q8LAP8	5e-36	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A4D9BQU5	1e-71	A0A4D9BQU5_SALSN; Uncharacterized protein
STRING	VIT_16s0098g01420.t01	1e-59	(Vitis vinifera)
STRING	POPTR_0001s11130.1	1e-59	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-32	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]