PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022980-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 210aa    MW: 23153.5 Da    PI: 4.4549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022980-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-182979155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ++ykGVr +k +g++v+eIr p   + +  r++lg+++tae+Aa+a +aa  +l+g
  SMil_00022980-RA_Salv 29 CKYKGVRKRK-WGKYVSEIRLP---N-CrERIWLGSYDTAEKAARAFDAALYCLRG 79
                           79*****999.**********8...3.45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-102979IPR001471AP2/ERF domain
CDDcd000185.64E-292989No hitNo description
SuperFamilySSF541711.05E-193088IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-283088IPR001471AP2/ERF domain
SMARTSM003801.0E-313093IPR001471AP2/ERF domain
PROSITE profilePS5103220.9823087IPR001471AP2/ERF domain
PRINTSPR003671.9E-93142IPR001471AP2/ERF domain
PRINTSPR003671.9E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVKSPEKQHQ PSSAAALEVV REASSSSSCK YKGVRKRKWG KYVSEIRLPN CRERIWLGSY  60
DTAEKAARAF DAALYCLRGG NAKFNFPDNP PEIENGRSMT PAEIQVAAAR FAHAAAGAET  120
SGRVDDLDSQ SDSSEALQHA ESPCPSVSDM TNIPLDNVFL DQFLTLSTDN NISDFGLFPG  180
FDDLSGDFLA PPDYYWPDNT DELSSQLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-162587972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093871.15e-97ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-57ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A4D9BIA31e-102A0A4D9BIA3_SALSN; Uncharacterized protein
STRINGMigut.L01585.1.p3e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]