PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023032-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 150aa    MW: 16855.8 Da    PI: 7.4351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023032-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08129149526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             C++f++ GtC+ Gd C F+Hg
  SMil_00023032-RA_Salv 129 ACPDFRK-GTCRKGDACEFSHG 149
                            7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.68E-5123149IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582125150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5128149IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6129149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAVRRCILLP WPSAADDHSS LALSPTAVNA NGNVDDYSLF FQADSLKALQ RYLPSNSTDV  60
VPEFSFADSD GSDFLPVDAH SCDNFRMFEF KVRKCTRGRS HDWTECPFAH PGEKARRRDP  120
RKYHYSGTAC PDFRKGTCRK GDACEFSHGV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-47HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBankKP7170363e-47KP717036.1 Triticum turgidum subsp. durum cultivar Creso TZF1-B gene, complete cds.
GenBankKP7170393e-47KP717039.1 Triticum turgidum subsp. durum cultivar Creso TZF1-B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078221.15e-74zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G29e-52C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2G9H9E76e-80A0A2G9H9E7_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.K00565.1.p4e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.13e-52C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]