PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023074-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 259aa    MW: 27661.7 Da    PI: 9.8989
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023074-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20166199134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk+
  SMil_00023074-RA_Salv 166 CSDCRTTKTPLWRSGPSGPKSLCNACGIRYRKKR 199
                            ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-19160211IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14161209No hitNo description
Gene3DG3DSA:3.30.50.108.0E-16162205IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
PfamPF003205.2E-18166199IPR000679Zinc finger, GATA-type
CDDcd002021.34E-14166217No hitNo description
PROSITE profilePS5011413.455166219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
CPNFRVVGRR GRRAGGRKKL WNFPLIPFPF SPSRWAARFA GASRQPCLPA CALTVTLLPE  60
NRRGITVKSP SRGRLPRVSG DPSSEYHSSG ESGFSGESGS SDKGDSSGEC DSSGECDFSG  120
ECPLASVIPL ASVIPLARAI SLLPVIPLEE GLSSEETNGA EIKKCCSDCR TTKTPLWRSG  180
PSGPKSLCNA CGIRYRKKRP AAAATVKNDG KKGKIGKTRR NLMPLGQEVE VVERSPREWG  240
EVERAALLLM ALSCGAVFA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-27GATA transcription factor 16