PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023289-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 371aa MW: 41103.4 Da PI: 9.6415

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023289-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	150	172	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F ++nL+ H+ + H SMil_00023289-RA_Salv 150 SCPQCGQVFMKPENLELHQAVrH 172 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.058	149	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	151	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.84E-24	175	369	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.0E-14	178	367	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MAKSRKQSRE KKKQEEYEKP HSWAAVRSLF TCKYLQVQHQ QHLVHLQEPK PKEITNSSKK 60 MKCSGSLCSN TKVMQKPEII SASPNKKRAA AHLSSSESDA SSRSLIKAAA SPSVRSMPFR 120 KLSGCYECRM VVDPVLGMTR DPSLRATISS CPQCGQVFMK PENLELHQAV RHAVCELGAE 180 DTSKNIVEII FQSSWLKKQA PVCKIERILK VQNTPKTISK FEEYRDIIKG KANPKKQQPR 240 CAADGNELLR FHCTTLMCSL GLNGSSNLCN SIPSCAVCSI IRNGFKLSSR GIFTTATSGK 300 AHDGCRDDGK RAMLVCRVIA GRVNNNSDAN LDDYDSVAGP LGLYSNFDEL YVFNPKAILP 360 CFVVIYTGFS S

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MAKSRKQSRE KKKQEEYEKP HSWAAVRSLF TCKYLQVQHQ QHLVHLQEPK PKEITNSSKK  60
MKCSGSLCSN TKVMQKPEII SASPNKKRAA AHLSSSESDA SSRSLIKAAA SPSVRSMPFR  120
KLSGCYECRM VVDPVLGMTR DPSLRATISS CPQCGQVFMK PENLELHQAV RHAVCELGAE  180
DTSKNIVEII FQSSWLKKQA PVCKIERILK VQNTPKTISK FEEYRDIIKG KANPKKQQPR  240
CAADGNELLR FHCTTLMCSL GLNGSSNLCN SIPSCAVCSI IRNGFKLSSR GIFTTATSGK  300
AHDGCRDDGK RAMLVCRVIA GRVNNNSDAN LDDYDSVAGP LGLYSNFDEL YVFNPKAILP  360
CFVVIYTGFS S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855037.1	1e-167	PREDICTED: uncharacterized protein LOC105974477
Refseq	XP_022894781.1	1e-166	uncharacterized protein LOC111409094 isoform X1
Refseq	XP_022894782.1	1e-166	uncharacterized protein LOC111409094 isoform X2
TrEMBL	A0A4D9BXE1	0.0	A0A4D9BXE1_SALSN; Uncharacterized protein
STRING	Migut.C01171.1.p	1e-166	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	5e-99	C2H2-like zinc finger protein