PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023296-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 244aa    MW: 27866.5 Da    PI: 6.8016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023296-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.3e-1570122155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            ++ +hn+ Er RR+++N+ +++Lr+llP+ +   +skKls  ++  ++ +YI +Lq
  SMil_00023296-RA_Salv  70 KKLNHNASERDRRKKMNTLYANLRSLLPPeD---HSKKLSIPATISRVLKYIPELQ 122
                            6789*************************77...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1667139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-1267126No hitNo description
PROSITE profilePS5088814.07569121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1270135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1270122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1075127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLAISPQMCS YGWVMDDPMM SHEQENLSYF SRERTETTSG SIDPHSSPSS KIPLDFNDDF  60
LNGDGDKKVK KLNHNASERD RRKKMNTLYA NLRSLLPPED HSKKLSIPAT ISRVLKYIPE  120
LQREVERLMQ QKERFISKIS MAAENSSLEF KNHTEKPTQR SSNSAASATR INDGQVVIQI  180
SMPKSEKGSI SEAISRLEEE GFLMVNASCF ESFEGRLFYN LHFQAQEGQV IDAEKLKEKV  240
WPLM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575180.0KP257518.1 Salvia miltiorrhiza clone 85 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828055.12e-78PREDICTED: transcription factor ORG2-like
TrEMBLA0A0H3Y8X70.0A0A0H3Y8X7_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.J01664.1.p1e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-47bHLH family protein