PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023477-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 156aa    MW: 17333.7 Da    PI: 7.8152
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023477-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.12.6e-37161151100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCaaCk++rr+Ca+dC+lapyf a+++++fanvh+lFG ++v+kll+++ + +r+da++s+vyeA+ ra  Pv G++g   +l++q++
  SMil_00023477-RA_Salv  16 ACAACKHQRRRCAADCPLAPYFSADRQSDFANVHRLFGIKKVSKLLQSVAPRHRDDAAKSIVYEANLRAMHPVAGCFGAAAELRRQIQ 103
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                              +ael+ + ++
  SMil_00023477-RA_Salv 104 ICEAELEIVSQN 115
                            ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.47115116IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3616112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGTPEPPPPL PPAKSACAAC KHQRRRCAAD CPLAPYFSAD RQSDFANVHR LFGIKKVSKL  60
LQSVAPRHRD DAAKSIVYEA NLRAMHPVAG CFGAAAELRR QIQICEAELE IVSQNLAFLK  120
QNNSFVVNNQ ETDFQIEENS NLQQFFNDLK PALADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2681163111LOB family transfactor Ramosa2.1
5ly0_B6e-2681163111LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1U8HFD12e-33A0A1U8HFD1_CAPAN; LOB domain-containing protein 22-like
TrEMBLA0A2G2W5Z88e-33A0A2G2W5Z8_CAPBA; Uncharacterized protein
TrEMBLA0A2G2YWR12e-33A0A2G2YWR1_CAPAN; LOB domain-containing protein 22 (Fragment)
STRINGXP_010262241.19e-33(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-35LOB domain-containing protein 22