PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023747-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 246aa MW: 27685.6 Da PI: 6.6873

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023747-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.2	2.1e-21	57	138	9	90
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +vGF vr+ + ++s+ +g++ r++ C+k+g++ ++k e+++r++ r gCka++ k+ek+gkw+vt++++eHnH+l+ SMil_00023747-RA_Salv 57 HVGFVVRVMQRRRSEIDGRTLARRLGCNKQGFSPNTKGMIGPEKKPRPSAREGCKATILFKLEKSGKWVVTRFVKEHNHPLV 138 58*********************************999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-19	58	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MLHVLRMDLV ASTVVEAAAG DSDKEDLNSR DSDEDDLAEA EEEKTWSGEG GEVVEPHVGF 60 VVRVMQRRRS EIDGRTLARR LGCNKQGFSP NTKGMIGPEK KPRPSAREGC KATILFKLEK 120 SGKWVVTRFV KEHNHPLVVT AQEDTNVVRP TPSSTHIYQL FQQKLPVLII RSRMQLDKDK 180 RIQELARELQ RQEELCAAYR ERLINLLSTI ESQADQMSSK VLAVVESVKK AEAEALTEAL 240 TIPLDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012833525.1	3e-92	PREDICTED: protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A4D8ZVZ8	1e-117	A0A4D8ZVZ8_SALSN; Uncharacterized protein
STRING	Migut.N00673.1.p	4e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-36	FAR1 family protein