PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023774-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 102aa    MW: 12328 Da    PI: 10.3537
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023774-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.5e-101844128
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                           r rWT+eE+ ++++a k++G   W +I 
  SMil_00023774-RA_Salv 18 RERWTEEEHNRFLEALKLYGHA-WQRIE 44
                           78******************99.**995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-81247IPR009057Homeodomain-like
PROSITE profilePS500906.111362IPR017877Myb-like domain
TIGRFAMsTIGR015571.6E-81644IPR006447Myb domain, plants
PfamPF002491.1E-61843IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-71857IPR009057Homeodomain-like
CDDcd001670.008912043No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MFILRWQTRK PYTITKQRER WTEEEHNRFL EALKLYGHAW QRIEGLYFLT LPNRNRRTYR  60
NQDYCADKKS CTEVYHKGEW TATGSRPRPA GAKLVSKFSD SL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.12e-19circadian clock associated 1