PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023849-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 637aa    MW: 69682.5 Da    PI: 7.6374
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023849-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like888.7e-28214267155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  SMil_00023849-RA_Salv 214 KARVVWSVELHQQFVTAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 267
                            68*******************.********************************8 PP
2Response_reg74.15.3e-25291371109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vdD+ + +++++q+l+k  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e+ lp+i+++a g  +++
  SMil_00023849-RA_Salv  29 VLVVDDDVICLRVVEQMLRKCMY-NVTSCSQATVALNLLRERKgsFDIVLSDVHMPDMDGFKLLELVGL-EMGLPVIMMSADGRTNLV 114
                            89*********************.***************999999*******************97754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga d+l Kp+  eel +
  SMil_00023849-RA_Salv 115 MRGVRHGACDYLIKPIRDEELKN 137
                            ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1596636IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-3326150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.1E-4026160No hitNo description
SMARTSM004488.1E-2927139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.37128143IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2229137IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.18E-2630142No hitNo description
PROSITE profilePS5129411.409211270IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-29212272IPR009057Homeodomain-like
SuperFamilySSF466891.34E-19212271IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-24214267IPR006447Myb domain, plants
PfamPF002491.5E-6216265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
LAGAIMACAS GGKLEVAAVS QQFPVGLRVL VVDDDVICLR VVEQMLRKCM YNVTSCSQAT  60
VALNLLRERK GSFDIVLSDV HMPDMDGFKL LELVGLEMGL PVIMMSADGR TNLVMRGVRH  120
GACDYLIKPI RDEELKNIWQ HVVRKKQNEM KEHDHSCSME DHDRLKRAID DTEYASSLNE  180
GAGADEVLKT QKKRRDSKDE DDEMENDDPT MSKKARVVWS VELHQQFVTA VNQLGIDKAV  240
PKRILELMNV PGLTRENVAS HLQKFRLYLK RLSGVAHQQV GLASSYCGPV EQNLKLASLG  300
RIDFQALAAS GQLPPQTLAA LHAELSRPTG NLILPGMDQR TLLHASLQGP KCVSVERVAY  360
AQPLIKCLPN ISKQSSQPLR SNGDVHPEFA AWSSKNLGDM VPACNLGTVA ETNSLLSFIQ  420
QQQKQAMMPE PSRSINVQPS CLVVPSQSSP NHQAGNSPAS VNQNCSFRNP AVDYINPLPQ  480
SNNSSGIGQV LEVECKAVSA PSEFGAAASV SSTSSCSRNI QESSCQRVRN SPSTINAAVQ  540
PPNMAFVQGS YNGKLNLVQG STGNPVYIGK GTSIPSRFAV NEQELRMNNL SQVRSYVEKG  600
SNKVKQEPNM DLMENVKLGI PVKQHFSQND LMSVFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21210273164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070559.10.0two-component response regulator ORR21
SwissprotA2XE311e-156ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-156ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A4D9B0A90.0A0A4D9B0A9_SALSN; Two-component response regulator ARR-B family
STRINGVIT_01s0011g05830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-103response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]