PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023990-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 182aa MW: 21261.5 Da PI: 8.5981

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023990-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	47.9	2.6e-15	17	59	4	46
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +++le l+++F +p+kd+ keLgv+ +++Kr+C +y I+RWP SMil_00023990-RA_Salv 17 NLNLEILKQHFGKPLKDVEKELGVGRSTIKRACKEYHIDRWPN 59 899***************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.218	1	85	IPR003035	RWP-RK domain
Pfam	PF02042	9.2E-14	17	60	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-16	92	174	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-17	99	170	No hit	No description
SMART	SM00666	3.2E-12	99	179	IPR000270	PB1 domain
PROSITE profile	PS51745	16.078	99	177	IPR000270	PB1 domain
Pfam	PF00564	3.0E-13	100	170	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
LITKTREERK RKSGRMNLNL EILKQHFGKP LKDVEKELGV GRSTIKRACK EYHIDRWPNK 60 EEHIKNLSLI QKQSGRDSQQ DTSNEYTHPV IVVEEEKEKV MIKVKYKEDT IKFELCLSLG 120 VSKLFEEVAT RLKLKVDTFK LKYVDEDNDE ILLACDADLH LCPKTLTATG QTYVELESKK 180 RE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012852556.1	5e-45	PREDICTED: protein NLP7-like isoform X1
Refseq	XP_012852557.1	5e-45	PREDICTED: protein NLP7-like isoform X2
TrEMBL	A0A4D8Z0G4	7e-50	A0A4D8Z0G4_SALSN; Uncharacterized protein
STRING	Migut.E00886.1.p	1e-49	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-12	Nin-like family protein