PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024017-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 345aa    MW: 37862.2 Da    PI: 5.1469
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024017-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.24.7e-37271172101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g
  SMil_00024017-RA_Salv  27 FLTKTYQLVDDQAIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVMPDR---------WEFSNECFRRG 105
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +k+ll++i+r+k
  SMil_00024017-RA_Salv 106 EKKLLCDIQRRK 117
                            **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3819111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5723116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3524116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-3327116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.5E-4174199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAPPPVDRSG SGESTAGDAP RSLPTPFLTK TYQLVDDQAI DDVISWNEDG STFIVWNPTE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV MPDRWEFSNE CFRRGEKKLL CDIQRRKIAP  120
SSSVVVAAAA AATAVLPTIS TPLTVSPSDS GEEQVISSSN SPGRVRDFSG GTSELIGENE  180
RLRKENSQLN KELSQMKNLC NNIFSLMSNY ASSNKSNGGS SSDQQTYSCK LSVAENAMQP  240
LDLLPMTKFC EEMQTAVVAA AANGAEESHI RSAAEEISAR LFGVPIGMKR GREGEGSSAE  300
HDMDLQLQQP VGDIKSEPMD QDSSGDDRKS AWLTRSNSRN RKVLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-251211617129Heat shock factor protein 1
5d5v_B2e-251211617129Heat shock factor protein 1
5d5v_D2e-251211617129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.10.0heat stress transcription factor B-2a
RefseqXP_011076202.10.0heat stress transcription factor B-2a
TrEMBLA0A4D8YLM70.0A0A4D8YLM7_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.F00357.1.p1e-176(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-85heat shock transcription factor B2A