PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024326-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

ZF-HD

Protein Properties

Length: 163aa MW: 18132 Da PI: 7.2224

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024326-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	63.9	3.2e-20	1	38	17	58
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +Gg+a+DGCgEfmp+ ++ +al+C+ACgCHRnFHR+e + SMil_00024326-RA_Salv 1 MGGNATDGCGEFMPT----ADLDALTCSACGCHRNFHRKEAD 38 7***********9....6899**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-12	1	40	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.261	1	36	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.8E-19	1	36	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.7E-15	1	37	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MGGNATDGCG EFMPTADLDA LTCSACGCHR NFHRKEADGD PCDGCYPRIG RKLFLGHHHH 60 QHKGYRPHQM IMHSYNSRRP LRVRRAGRRQ SAAAGEEEVQ NQVQSGAEGE DAQLCRESWV 120 ENTEAGRRSG AAVLPRSWSQ EKSFEGMDAQ QQAYSCKEDP SSI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015940090.2	3e-30	zinc-finger homeodomain protein 4
Swissprot	O64722	2e-17	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A4D8YCK1	2e-35	A0A4D8YCK1_SALSN; Uncharacterized protein
TrEMBL	A0A4D9AL90	1e-35	A0A4D9AL90_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5154	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-19	homeobox protein 31

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]