PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024327-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 173aa    MW: 19654.2 Da    PI: 9.1197
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024327-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer63.73.6e-201381758
            ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                           +Gg+a+DGCgEfmp+    ++ +al+C+ACgCHRnFHR+e +
  SMil_00024327-RA_Salv  1 MGGNATDGCGEFMPT----ADLDALTCSACGCHRNFHRKEAD 38
                           7*************9....6899****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-15137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-12140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.261136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-18136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.10.605.0E-3182158IPR009057Homeodomain-like
SuperFamilySSF466896.15E-1984157IPR009057Homeodomain-like
TIGRFAMsTIGR015657.0E-2796152IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGGNATDGCG EFMPTADLDA LTCSACGCHR NFHRKEADGD PCDGCYPRIG RKLFLGHHHH  60
QHKGYRPHQM IMHSYNSGGP SESDEQDGGR APQLVKKRFR TKFSQEQKEK MLNFAEKVGW  120
KIQKQEEGVV QQFCQEVGVK RRVLKVWMHN NKHTLAKKTL LQSDPQHQSL GTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-24951541675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087615.17e-76zinc-finger homeodomain protein 4
SwissprotO647221e-55ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A4D9AL904e-95A0A4D9AL90_SALSN; Uncharacterized protein
STRINGXP_002525870.19e-74(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.15e-58homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]