PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024456-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 152aa    MW: 16975.1 Da    PI: 8.3188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024456-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.2e-082067152
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
                           ++ykGV+ +k +g++v eI+ p   + +  r  l++++t  + a+a +aa  +
  SMil_00024456-RA_Salv 20 CKYKGVCKRK-WGKYVFEIKLP---N-CrERLLLESYDTTAKVARAFDAALYC 67
                           79*****999.*******9997...3.45********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.9432198IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-72167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-122167IPR001471AP2/ERF domain
SMARTSM003806.0E-521104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MLRHLAALVV VQEASSSSSC KYKGVCKRKW GKYVFEIKLP NCRERLLLES YDTTAKVARA  60
FDAALYCQDP GRHRRLTLVE KAARAFGGDL GNAKFNFPDN PPEIQIQVAA ARFAHASTDA  120
ETSSRVVDDL DSQWNSLSSS EALQHAEGFQ YY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093871.16e-37ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-28ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A4D9BIA34e-31A0A4D9BIA3_SALSN; Uncharacterized protein
STRINGGorai.001G016800.18e-28(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]