PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024477-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 189aa MW: 21420.5 Da PI: 10.1223

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024477-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4e-06	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SMil_00024477-RA_Salv 76 FVCEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	14.5	0.0001	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ SMil_00024477-RA_Salv 152 WKCEKCSKKYAVQSDWKAHSKTC 174 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.6E-6	75	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.08E-7	75	98	No hit	No description
PROSITE profile	PS50157	10.949	76	98	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.3E-5	76	98	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	117	147	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.0E-5	140	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.08E-7	147	172	No hit	No description
SMART	SM00355	140	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MMKQISAIQE ENISNLTSAS NDASAASSTG GEMYPPPYFQ TPPPPAKKKR SQPGHPDPGS 60 EVISLSPRTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSSK DVRKKVYVCP 120 ETTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-23	148	189	3	44	Zinc finger protein JACKDAW
5b3h_F	3e-23	148	189	3	44	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	114	KLKQRSSKDVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072643.1	1e-113	protein indeterminate-domain 11, partial
Refseq	XP_022885115.1	1e-111	protein indeterminate-domain 11-like
Refseq	XP_022885116.1	1e-111	protein indeterminate-domain 11-like
Swissprot	Q9LVQ7	1e-97	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A4D8Z8S0	1e-115	A0A4D8Z8S0_SALSN; Uncharacterized protein
STRING	Gorai.011G064700.1	1e-107	(Gossypium raimondii)
STRING	XP_009626387.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-84	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]