PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024488-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 167aa MW: 19360 Da PI: 9.9754

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024488-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.8	4.9e-05	35	63	1	29
TT--SS--HHHHHHHHHHHHHSSS--HHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee 29 rrk+ ++tkeq + Lee F++n++++ ++ SMil_00024488-RA_Salv 35 RRKKLRLTKEQSRLLEESFKQNHTLNPRR 63 79999*******************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-4	16	63	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MKELDINQVP SSGTDEECME EEKEEGESPN RGLARRKKLR LTKEQSRLLE ESFKQNHTLN 60 PRRYKGARLD VFRSMRNMRP AWVASRGQSK LVWVTPSVQQ QNFHKQQRHF HLQTWAFQRN 120 PVALMGGNYA LDTLVWGNIS LVEVAVFVDL TLDQGMSLVP HIRSSVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022776390.1	3e-16	homeobox-leucine zipper protein HOX3-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70920.1	5e-13	homeobox-leucine zipper protein 18