PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00024515-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

BBR-BPC

Protein Properties

Length: 293aa MW: 32792.5 Da PI: 8.6676

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00024515-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	315.6	1.6e-96	1	293	29	301
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslq 112 m++ aerda+irern+al e+k a++erdma l+rd+a+aern a+ erd+++++l ++e s++ +++g + sg k i + q SMil_00024515-RA_Salv 1 MAITAERDAAIRERNMALEERKRAFQERDMAMLERDAAIAERNTAMQERDEAIASLRYRESSMNdntnIPDSFGNELASGGKRIIQYQ 88 78899******************************************************99987544556788999**9999 PP GAGA_bind 113 qlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader............. 186 q+++ +++d a+ + + + ++ i a++ ++ k+++ ++ + k+ k++k+ k+ + ++ + + v ke+++++ SMil_00024515-RA_Salv 89 QQQQMRVSDAAYSpKGNLRGND---IGIAETAETAKPRRGRQTKDKEGKATKSAKPPRAGKRTAEAVIKEEVNSDayngwsneqgles 173 9999999999998444443333...3333333333333333444455555555555555555555555555443345678899* PP GAGA_bind 187 ......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268 ++ ++k +l+ln++++Des++PvPvCsCtG+++ CY+WGnGGWqSaCCtttiS+yPLP+++++r +R++grKmS++af+kl SMil_00024515-RA_Salv 174 deeyldKQVSWK-DNLGLNQINFDESAMPVPVCSCTGSPQPCYRWGNGGWQSACCTTTISMYPLPQVANKRYSRVGGRKMSGSAFNKL 260 95555555.69********************************************************************* PP GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 L++LaaeGyd+s p+DLkdhWAkHGtn++ t++ SMil_00024515-RA_Salv 261 LNRLAAEGYDFSSPLDLKDHWAKHGTNRYSTLK 293 ***************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.5E-84	1	293	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	6.2E-96	1	293	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAITAERDAA IRERNMALEE RKRAFQERDM AMLERDAAIA ERNTAMQERD EAIASLRYRE 60 SSMNDNTNIP DSFGNELASG GKRIIQYQQQ QQMRVSDAAY SPKGNLRGND IGIAETAETA 120 KPRRGRQTKD KEGKATKSAK PPRAGKRTAE AVIKEEVNSD AYNGWSNEQG LESDEEYLDK 180 QVSWKDNLGL NQINFDESAM PVPVCSCTGS PQPCYRWGNG GWQSACCTTT ISMYPLPQVA 240 NKRYSRVGGR KMSGSAFNKL LNRLAAEGYD FSSPLDLKDH WAKHGTNRYS TLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099810.1	1e-170	protein BASIC PENTACYSTEINE6
Refseq	XP_011099811.1	1e-170	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	7e-86	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A4D8ZWH3	0.0	A0A4D8ZWH3_SALSN; Uncharacterized protein
STRING	Migut.H01143.1.p	1e-144	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	4e-88	basic pentacysteine 6