PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024733-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 234aa    MW: 26536.1 Da    PI: 8.194
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024733-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.33e-12108158656
                            HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                            rerr++kNRe+A rsR+RK+a+ +eLe  + +Le+eN+ L ke  e kk+ 
  SMil_00024733-RA_Salv 108 RERRMIKNRESAARSRERKQAYEAELESMAVKLEEENDILLKEKAERKKKR 158
                            8*************************************9987766665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-7103167IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.117105157IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.8E-12106162No hitNo description
SuperFamilySSF579597.5E-9108156No hitNo description
CDDcd147071.21E-14108147No hitNo description
PfamPF001701.2E-9108158IPR004827Basic-leucine zipper domain
PROSITE patternPS000360110125IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
LIPPSRSMSP DNSEPPRTGK RSADDVWKEI MAGTQPKKEM MTLEDFLLKA EEAASTGAAA  60
AVKLKEEGGS IGGIFDYMNS TEEGGDARAR AKRSFSLSAA PGKAVELRER RMIKNRESAA  120
RSRERKQAYE AELESMAVKL EEENDILLKE KAERKKKRLK KVIIFLSYAE CDTCNRYAKT  180
TTHPAEKRLH AVVIFGHTEV MRRDFLQWDE ENGFYGHISE YSSEMYDLST PTFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160RKKKRLKK
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022874483.12e-43G-box-binding factor 4-like isoform X1
SwissprotP427773e-27GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A4D8ZAC32e-67A0A4D8ZAC3_SALSN; ABA responsive element binding factor
TrEMBLA0A4D9C4L53e-68A0A4D9C4L5_SALSN; ABA responsive element binding factor
STRINGMigut.C00999.1.p3e-45(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.12e-23G-box binding factor 4